Supplemental Figure S2. Rank order plots of the hexaploid wheat consensus map vs. the tetraploid wheat consensus for each of the 14 tetraploid wheat chromosomes. The tetraploid map rank marker order is reported in the X axis and the corresponding hexaploid map rank order is in the Y axis. A HIGH-DENSITY, SNP-BASED CONSENSUS MAP OF TETRAPLOID WHEAT AS A BRIDGE TO INTEGRATE DURUM AND BREAD WHEAT GENOMICS AND BREEDING Marco Maccaferri 1§, Andrea Ricci 1, Silvio Salvi 1, Sara Giulia Milner 1, Enrico Noli 1, Pier Luigi Martelli 2, Rita Casadio 2, Eduard Akhunov 3, Simone Scalabrin 4, Vera Vendramin 4, Karim Ammar 5, Antonio Blanco 6, Francesca Desiderio 7, Assaf Distelfeld 8, Jorge Dubcovsky 9, Tzion Fahima 10, Justin Faris 11, Abraham Korol 10, Andrea Massi 12, Anna Mastrangelo 13, Michele Morgante 4, Curtis Pozniak 14, Steven Xu 11, Roberto Tuberosa 1 1 Department of Agricultural Science (DipSA), Viale Fanin 44, University of Bologna, Bologna, Italy 2 Biocomputing Group, Via Selmi 3, University of Bologna, Bologna, Italy 3 Department of Plant Pathology, Kansas State University, Manhattan, Kansas Istituto di Genomica Applicata, c/o Parco Scientifico e Tecnologico L. Danieli, Udine, Italy and University of Udine, Dipartimento di Scienze Agrarie e Ambientali, Udine, Italy 5 CIMMYT Carretera Mexico-Veracruz km 45, Texcoco, Mexico 6 Dipartimento di Biologia e Chimica Agro-forestale ed ambientale, Università di Bari, Aldo Moro, Via Amendola 165/A, Bari, Italy 7 Consiglio per la ricerca e la sperimentazione in agricoltura, Genomics Research Centre, Via San Protaso 302, Fiorenzuola d'Arda, Italy 8 Faculty of Life Sciences, Dept. of Molecular Biology and Ecology of Plants, Tel Aviv University, Tel Aviv, Israel 9 Department of Plant Sciences, University of California, Davis, CA 95616, USA, and Howard Hughes Medical Institute, Chevy Chase, MD Department of Evolutionary and Environmental Biology, Institute of Evolution, Faculty of Science and Science Education, University of Haifa, Mt. Carmel, Haifa, Israel 11 USDA-ARS Cereal Crops Research Unit, NCSL 1605 Albrecht Blvd. N., Fargo, ND, USA 12 Società Produttori Sementi Bologna (PSB), Via Macero 1, Argelato, Italy 13 Consiglio per la ricerca e la sperimentazione in agricoltura, Cereal Research Centre, SS16 km 675, Foggia, Italy 14 Crop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada

Chr. 1A Chr. 1B Chr. 2A Chr. 2B Chr. 3A Chr. 3B Rank marker order – tetraploid consensus map Rank marker order – Hexaploid consensus map

Chr. 4A Chr. 4B Chr. 5A Chr. 5B Rank marker order – tetraploid consensus map Rank marker order – Hexaploid consensus map

Chr. 6A Chr. 6B Chr. 7A Chr. 7B Rank marker order – tetraploid consensus map Rank marker order – Hexaploid consensus map